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A computational report, in one page

Python cleans a committed dataset, draws the charts and fits the model as the page builds; every figure and table is numbered and cross-referenced.

Nothing below was pasted in. The chart, the coefficient table and the numbers quoted around them were produced by the Python cells you can read on this page, running against a committed CSV while the page was being built. Change one cell in the source and only that cell and whatever depends on it runs again.

data/latency.csv is a synthetic quarter of queue telemetry: thirteen ISO weeks, three regions, two release channels, 78 rows, written from a fixed seed so that anyone who clones the repository re-runs this page and gets these numbers back. The generating process has a gentle downward drift in it, a canary penalty that decays to nothing, and a storage incident in ap-south in week 33. The analysis below is the real thing, and it goes looking for all three.


import matplotlib
import matplotlib.pyplot as plt
import pandas as pd
from IPython.display import HTML, display

# Taliesin renders every inline matplotlib figure TWICE, once with the light theme's
# foreground and once with the dark theme's, and the page swaps them when the reader
# toggles the theme, so `INK` below is only the fallback for anything the recolour does
# not reach. Data colours are never touched, so those DO have to read on both themes:
# three mid-chroma hues, no near-white and no near-black.
INK = "#7d7d7d"
REGION_COLOUR = {"eu-west": "#3b82c4", "us-east": "#c4713b", "ap-south": "#5a9e6f"}

matplotlib.rcParams.update({
    "figure.facecolor": "none",
    "axes.facecolor": "none",
    "savefig.facecolor": "none",
    "savefig.transparent": True,
    "text.color": INK,
    "axes.labelcolor": INK,
    "axes.edgecolor": INK,
    "xtick.color": INK,
    "ytick.color": INK,
    "axes.spines.top": False,
    "axes.spines.right": False,
    "axes.grid": True,
    "grid.color": INK,
    "grid.alpha": 0.22,
    "grid.linewidth": 0.6,
    "font.size": 9,
    "figure.dpi": 150,
})

INCIDENT_WEEK = 33
INCIDENT_REGION = "ap-south"

latency = pd.read_csv("data/latency.csv")
incident = (latency.week == INCIDENT_WEEK) & (latency.region == INCIDENT_REGION)
clean = latency[~incident]

How the tail moved


fig, ax = plt.subplots(figsize=(7.2, 3.4))

for region, colour in REGION_COLOUR.items():
    for channel, style in (("stable", "-"), ("canary", "--")):
        series = latency[(latency.region == region) & (latency.channel == channel)]
        ax.plot(
            series.week,
            series.p95_ms,
            style,
            color=colour,
            linewidth=1.6 if channel == "stable" else 1.1,
            label=f"{region} · {channel}",
        )

ax.axhline(150, linestyle=":", color=INK, linewidth=1.0)
ax.axvspan(INCIDENT_WEEK - 0.4, INCIDENT_WEEK + 0.4, color=INK, alpha=0.14)
ax.set_xlabel("ISO week")
ax.set_ylabel("p95 queue time (ms)")
ax.set_ylim(0, None)
ax.legend(frameon=False, ncol=3, fontsize=7.5, loc="upper center", bbox_to_anchor=(0.5, 1.22))
fig.tight_layout()
plt.show()
Figure 1: Weekly p95 by region. Stable is solid, canary dashed. The dotted rule is the 150 ms objective; the shaded band is the week-33 incident in ap-south, which the summary and the model below both leave out.

Outside the incident every region-week clears the 150 ms objective, and the quarter trends gently downward: that is the caching work that landed in week 27. The canary penalty is the other visible pattern. Early on the dashed lines sit well above their solid counterparts, and by week 39 they have converged.

Here is the same frame summarised by hand, typed into the source as an ordinary markdown table rather than displayed by a cell:

Table 1: Quarter totals by region. Each percentile column is the median over that region’s region-weeks, and ap-south has twelve of them rather than thirteen because the week-33 incident rows are dropped.
RegionWeeksRequests (M)p50 (ms)p95 (ms)Errors
ap-south121.859.20142.152107
eu-west134.040.0598.904840
us-east136.636.8087.207893

ap-south is slower than the other two at both percentiles and is also the smallest by volume, so its weekly numbers are the noisiest of the three. Any regional comparison has to survive that.

Is the canary still slower?

The question is whether the canary channel carries a latency penalty once the region and the quarter-long trend are accounted for. Latency is right-skewed and multiplicative, so the model is fitted on the log scale, which makes every coefficient a proportional effect rather than a fixed number of milliseconds:

log(p95i)=β0+βregion(i)+βcanarycanaryi+βwwi+εi \log(\text{p95}_{i}) = \beta_0 + \beta_{\text{region}(i)} + \beta_{\text{canary}} \cdot \text{canary}_i + \beta_w \cdot w_i + \varepsilon_i

with eu-west and stable as the reference levels and wiw_i the ISO week centred on week 27.


import numpy as np
from scipy import stats

# The model written out rather than handed to a formula library: it is five columns, so
# the design matrix IS the specification and there is nothing a formula string would make
# clearer. Treatment coding against `eu-west` and `stable`, so every coefficient reads as
# an effect relative to the reference level.
REGION_LEVELS = ["eu-west", "us-east", "ap-south"]


def fit_log_p95(frame):
    """OLS of log(p95) on region + channel + week centred on week 27.

    Returns one row per term with the estimate, its standard error and a two-sided
    p-value, which is what a tidy coefficient table carries.
    """
    columns = {"Intercept (eu-west, stable, week 27)": np.ones(len(frame))}
    for level in REGION_LEVELS[1:]:
        columns[f"Region: {level}"] = (frame.region == level).astype(float).to_numpy()
    columns["Channel: canary"] = (frame.channel == "canary").astype(float).to_numpy()
    columns["Per week elapsed"] = (frame.week - 27).astype(float).to_numpy()

    X = np.column_stack(list(columns.values()))
    y = np.log(frame.p95_ms.to_numpy())

    beta, *_ = np.linalg.lstsq(X, y, rcond=None)
    residual = y - X @ beta
    dof = len(y) - X.shape[1]
    cov = (residual @ residual / dof) * np.linalg.inv(X.T @ X)
    se = np.sqrt(np.diag(cov))

    return pd.DataFrame({
        "term": list(columns),
        "estimate": beta,
        "std_error": se,
        "p_value": 2 * stats.t.sf(np.abs(beta / se), dof),
    })


coefficients = fit_log_p95(clean)

coefficient_table = pd.DataFrame({
    "Term": coefficients.term,
    "Estimate (log)": coefficients.estimate.round(3),
    "SE": coefficients.std_error.round(3),
    "Factor": np.exp(coefficients.estimate).round(3),
    "p": ["<0.001" if p < 0.001 else f"{p:.3f}" for p in coefficients.p_value],
})

# A bare `coefficient_table` would render pandas' own repr: a `border="1"` table tagged
# `class="dataframe"`, carrying a `<style scoped>` block and a row-index column. `to_html`
# with the index and the border off emits plain markup the page's own styling can reach.
display(HTML(coefficient_table.to_html(index=False, border=0)))
Table 2: Fitted coefficients on the log scale, with the multiplicative effect each one implies. A factor of 1.00 is no effect.
Term Estimate (log) SE Factor p
Intercept (eu-west, stable, week 27) 4.676 0.019 107.320 <0.001
Region: us-east -0.113 0.018 0.893 <0.001
Region: ap-south 0.366 0.018 1.441 <0.001
Channel: canary 0.092 0.015 1.097 <0.001
Per week elapsed -0.020 0.002 0.980 <0.001

The three floats on this page were made three different ways, and the two tables share one counter. Figure 1 is a matplotlib figure the page drew as it built, Table 1 is a markdown table typed into the source by hand, and Table 2 is a pandas frame a cell displayed. They are numbered in the order they appear, whichever path produced them, and each reference in this paragraph is a link to the float it names.

What they add up to: over the quarter as a whole the canary channel is still measurably slower than stable, and that pooled coefficient hides the convergence the chart shows, because a single channel term has to split the difference between a large early penalty and none at all by week 39.